SAM Biotoxin Methods

Selected Analytical Methods for Environmental Remediation and Recovery (SAM) provides a list of methods or procedures to be used in analyzing environmental samples for biotoxin contaminants. These methods should be used to support remediation activities (site assessment through clearance) following a homeland security event. Procedures have been compiled for each biotoxin that may need to be identified and/or quantified following a contamination incident. Analytical procedures are not currently available for all the analyte-sample type combinations included in SAM. Future research needs include identification of additional methods and development and validation of the procedures listed.

Please note: SAM provides guidance for selecting biotoxin methods that have a high likelihood of assuring analytical consistency when laboratories are faced with a large scale environmental restoration crisis. Not all methods have been verified for the analyte/sample type combination listed. Please refer to the specified method to identify analyte/sample type combinations that have been verified. Any questions regarding information for biotoxin contaminants and/or methods should be addressed to the appropriate contact(s) listed on the Technical Contacts page of this Web site. See: SAM Technical Contacts.

Some of the biotoxins addressed in SAM are commonly found in the environment, and the methods assume that analysis will be used to evaluate contamination levels that are above background conditions. If possible, an investigation of initial background levels, as well as controls for background levels, should be performed.

Procedures listed for protein biotoxins are intended to address presumptive, confirmatory, and biological activity determinations. Because the confirmatory procedures listed for the small molecule biotoxins involve a determination of intact compound structure (an indication of biological activity capability), only presumptive and confirmatory methods are listed for these biotoxins. In terms of this document, presumptive methods, or methods that support a reasonable basis for accurate results, should be used in situations that require a large number of samples to be processed. Most of the presumptive methods identified use the immunoassay technique and are designed for large scale sample processing. The confirmatory method, or the method that corroborates the presumptive results, should be used on the smaller subset of samples for which presumptive analysis indicates the presence of the biotoxin. A variety of techniques are listed in SAM as confirmatory and generally are more time consuming and expensive. The use of these terms in SAM is not intended to redefine LRN usage of these terms. Click on the LRN Summary to see how the terms presumptive and confirmatory are used by LRN. If it is necessary to determine the biological activity of a toxin, either an assay (for proteins) or a technique such as HPLC that determines whether the structure of the biotoxin is intact and likely to be biologically active (for small molecules) may be used. Biological activity analysis should be applied on an as-needed basis following analysis with the confirmatory technique. See: LRN Summary.

EPA's NHSRC is working on a sample collection document that is intended as a companion to SAM. This sample collection document will provide information regarding sampling container/media, preservation, holding time, sample size, and shipping and is intended to complement the laboratory analytical methods that are the focus of SAM.

To determine the appropriate method that is to be used on an environmental sample, locate the biotoxin of concern using the Biotoxin Methods Query page. After locating the biotoxin, continue across the table and identify the appropriate analysis type. After an analysis type has been chosen, find the analytical technique (e.g., immunoassay) and analytical method applicable to the sample type of interest (solid, particulate, liquid/drinking water, or aerosol) corresponding to that particular analyte. See: Biotoxin Methods Query.

Below is a list of all selected biotoxin methods with a link to their method abstract. Due to the complexity of some tables and graphics, some of our information is not amenable to a screen reader. If you have trouble accessing information contact Kathleen Nickel (nickel.kathy@epa.gov) and accommodations will be made.

Method ID Method Title
LRN SAM and the U.S. Centers for Disease Control and Prevention (CDC) Laboratory Response Network (LRN)
Journal of Food Protection 71(9): 1868-1874 Literature Reference for Abrin (Journal of Food Protection. 2008. 71(9): 1868—1874)
Journal of Agricultural and Food Chemistry. 2008. 56(23): 11139-11143 Literature Reference for Abrin by Abrine Detection (Journal of Agricultural and Food Chemistry. 2008. 56(23): 11139—11143)
Analytical Biochemistry 378(1): 87-89 Literature Reference for Abrin and Ricin (Analytical Biochemistry. 2008. 378(1): 87-89)
Pharmacology & Toxicology 88(5): 255-260 Literature Reference for Abrin, Shiga Toxin, and Shiga-like Toxins (Pharmacology Toxicology. 2001. 88(5): 255—260)
FDA Bacteriological Analytical Manual, Chapter 17 FDA, Bacteriological Analytical Manual Online, Chapter 17. 2001. Botulinum Neurotoxins
Journal of Chemical Health and Safety. 2008. 15(6): 14-19 Literature Reference for Botulinum Neurotoxins by SNAP-25 and VAMP 2 Cleavage Product Detection (Journal of Chemical Health and Safety. 2008. 15(6): 14—19)
EPA Environmental Technology Verification (ETV) Reports-Lateral Flow Immunoassay Kits EPA Environmental Technology Verfication Reports (ETV)-Lateral Flow Immunoassay Kits
Journal of AOAC International 91(2): 376-382 Literature Reference for Ricin (Journal of AOAC International. 2008. 91(2): 376—382)
Journal of Analytical Toxicology. 29(3): 149-155 Literature Reference for Ricin by Ricinine Detection (Journal of Analytical Toxicology. 2005. 29(3): 149—155)
FDA Bacteriological Analytical Manual, Appendix 1 FDA Bacteriological Analytical Manual Online, Appendix 1. 2001. Rapid Methods for Detecting Foodborne Pathogens
Journal of Clinical Microbiology 35(8): 2051-2054 Literature Reference for Shiga and Shiga-like Toxin (Journal of Clinical Microbiology. 1997. 35(8): 2051—2054)
993.06 (AOAC) AOAC Official Method 993.06: Staphylococcal Enterotoxins in Selected Foods
Applied and Environmental Microbiology 63(6): 2361-2365 Literature Reference for Staphylococcal Enterotoxins Types A, B, and C (Applied and Environmental Microbiology. 1997. 63(6): 2361—2365)
991.31 (AOAC) AOAC Official Method 991.31: Aflatoxins in Corn, Raw Peanuts, and Peanut Butter
Journal of Chromatography 563(2): 299-311 Literature Reference for α-Amanitin (Journal of Chromatography B. 1991. 563(2): 299—311)
Journal of Food Protection 68(6): 1294-1301 Literature Reference for α-Amanitin, T-2 Mycotoxin (Journal of Food Protection. 2005. 68(6): 1294—1301)
Biomedical Chromatography 10(1): 46-47 Literature Reference for Anatoxin-a (Biomedical Chromatography. 1996. 10(1): 46—47)
Environmental Health Perspectives 110(2): 179-185 Literature Reference for Brevetoxins (Environmental Health Perspectives. 2002. 110(2): 179—185)
Toxicon 43(4): 455-465 Literature Reference for Brevetoxins (Toxicon. 2004. 43(4): 455—465)
Biochemical Journal 328(1): 245-250 Literature Reference for α-Conotoxin (Biochemical Journal. 1997. 328(1): 245—250)
Journal of Medicinal Chemistry 47(5): 1234-1241 Literature Reference for α-Conotoxin (Journal of Medicinal Chemistry. 2004. 47(5): 1234—1241)
FEMS Microbiology Letters 216(2): 159-164 Literature Reference for Cylindrospermopsin (FEMS Microbiology Letters. 2002. 216(2): 159—164)
ELISA Kits for Cylindrospermopsin ELISA Kits for Cylindrospermopsin
International Journal of Food Microbiology 6(1): 9-17 Literature Reference for Diacetoxyscirpenol (DAS) (International Journal of Food Microbiology. 1988. 6(1): 9—17)
Rapid Communications in Mass Spectrometry 20(9): 1422-1428 Literature Reference for Diacetoxyscirpenol (DAS) and T-2 Mycotoxin (Rapid Communications in Mass Spectrometry. 2006. 20(9): 1422—1428)
Journal of AOAC International 84(4): 1035-1044 Literature Reference for Microcystins (Journal of AOAC International. 2001. 84(4): 1035—1044)
Analyst 119(7): 1525-1530 Literature Reference for Microcystins (Analyst. 1994. 119(7): 1525—1530)
Journal of Pharmaceutical & Biomedical Analysis 7(3): 369-375 Literature Reference for Picrotoxin (Journal of Pharmaceutical & Biomedical Analysis. 1989. 7(3): 369—375)
Journal of AOAC International 78(2): 528-532 Literature Reference for Saxitoxin (Journal of AOAC International. 1995. 78(2): 528—532)
ELISA Kits for Saxitoxins ELISA Kits for Saxitoxins
Analytical Biochemistry 290(1): 10-17 Literature Reference for Tetrodotoxin (Analytical Biochemistry. 2001. 290(1): 10—17)
Journal of Clinical Laboratory Analysis 6(2): 65-72 Literature Reference for Tetrodotoxin (Journal of Clinical Laboratory Analysis. 1992. 6(2): 65—72)

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